| 1 | Introduction; Master equation | MK |
| 2 | Elements of population genetics | LM |
| 3 | Evolving populations (forward Kolmogorov) | MK |
| 4 | Population genetics (fitness, selection, ...) | LM |
| 5 | Fixation (backward Kolmogorov) | MK |
| 6 | Introduction to sequence alignment | LM |
| 7 | Algorithms for sequence alignment | LM |
| 8 | Significance of aligments (extreme value distributions) | MK |
| 9 | Ionic interactions | MK |
| 10 | Polymer theory 1, entropy elasticity, collapse | MK |
| 11 | Polymer theory 2, collapse, Random energy model | MK |
| 12 | Protein folding 1: elements of structure and forces | LM |
| 13 | Protein folding 2: evolved (designed) foldable proteins | LM |
| 14 | Protein folding 3: kinetics | LM |
| 15 | Protein folding 4: kinetics | LM |
| 16 | DNA (melting) | MK |
| 17 | RNA (secondary structure) | MK |
| 18 | Protein-DNA interactions 1: specific and non-specific binding | LM |
| 19 | Protein-DNA interactions 2: sequence-dependence & kinetics | LM |
| 20 | Microtubules | MK |
| 21 | Molecular motors & cell motility | MK |
| 22 | Introduction to networks | MK |
| 23 | Dynamics on networks 1 | MK |
| 24 | Dynamics on networks 2 | LM |
| 25 | Packing of DNA inside cells | LM |
| 26 | Cooperativity: hemoglobin and transcription factors | LM |
